PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g083180.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 423aa    MW: 47646.2 Da    PI: 8.6857
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g083180.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.9e-067092123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C++C++ F r  nL+ H r+H
  Csa05g083180.1 70 YVCEICNQGFQRDQNLQMHRRRH 92
                    9*********************9 PP

2zf-C2H213.70.00018149170223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      C+ C+k +  +s++k H++t+
  Csa05g083180.1 149 ICERCSKGYAVQSDYKAHLKTC 170
                     7*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.18E-56793No hitNo description
Gene3DG3DSA:3.30.160.601.7E-56992IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00527092IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.977092IPR007087Zinc finger, C2H2
PfamPF128740.027088No hitNo description
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SMARTSM00355160112142IPR015880Zinc finger, C2H2-like
SMARTSM00355110148175IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MIDYERSNNT KNLNNHHRNP PPSSSSSDLL PDGNGTAVTQ KRKRRPAGTP DPEAEVVSLS  60
PRTLLESDRY VCEICNQGFQ RDQNLQMHRR RHKVPWKLLK RETNEEVRKR VYVCPEPTCL  120
HHNPCHALGD LVGIKKHFRR KHSNHKQWIC ERCSKGYAVQ SDYKAHLKTC GTRGHSCDCG  180
RVFSRVESFI EHQDNCTVRR SQPSNHRLPQ QQHTANATQT ASTADNSENA DLSIGPILPG  240
HPLQRRKSPP FDQQPSSLLY PFGSSCATNG GIELQLLPSR YSTDETSLSL SIGTLDQTTM  300
SEVERKSYEK GETSLEREEA RREVKRQIEI AELEFAEAKR IRQHARAELH KAQIFREEAS  360
RRISATMMLI TCHNCKQHFQ APAASVPPPS QPHCTDESTS LAVSYVSSAT TEGEKASDRA  420
SS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0264780.0BT026478.1 Arabidopsis thaliana At1g68130 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010511768.10.0PREDICTED: protein SHOOT GRAVITROPISM 5-like
RefseqXP_010511769.10.0PREDICTED: protein SHOOT GRAVITROPISM 5-like
SwissprotQ9C9X70.0IDD14_ARATH; Protein indeterminate-domain 14
TrEMBLD7KVR70.0D7KVR7_ARALL; Atidd14-domain 14
STRINGfgenesh2_kg.2__1036__AT1G68130.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69328131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.10.0indeterminate(ID)-domain 14